Dylan S. Ogden Source Confirmed

Affiliation confirmed via AI analysis of OpenAlex, ORCID, and web sources.

Researcher

University of Arkansas at Fayetteville

faculty

4 h-index 12 pubs 78 cited

Research Areas

Protein Structure and Dynamics SARS-CoV-2 and COVID-19 Research Molecular Biology Techniques and Applications Computational Drug Discovery Methods Bioinformatics and Genomic Networks

Links

ORCID Lab Website

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OverviewAI-generated summary

Dylan S. Ogden's research focuses on the molecular dynamics and conformational transitions of proteins, particularly viral spike proteins. His work has investigated the structural dynamics of SARS-CoV-1 and SARS-CoV-2 spike proteins, comparing their conformational changes and transition pathways at an atomic level. Ogden has also explored the conformational dynamics of membrane proteins, such as the ABC exporter PCAT1, using microsecond-level molecular dynamics simulations to characterize thermodynamic and kinetic properties. His publications include studies on the string method with swarms of trajectories for characterizing complex systems. Ogden has collaborated with researchers including Mahmoud Moradi, Vivek Govind Kumar, James Losey, and Ugochi H. Isu, primarily at the University of Arkansas at Fayetteville.

Metrics

  • h-index: 4
  • Publications: 12
  • Citations: 78

Selected Publications

  • Atomic-level characterization of the conformational transition pathways in SARS-CoV-1 and SARS-CoV-2 spike proteins (2022) DOI
  • Prefusion spike protein conformational changes are slower in SARS-CoV-2 than in SARS-CoV-1 (2022) DOI
  • A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls (2022) DOI
  • Molecular Dynamics–Based Thermodynamic and Kinetic Characterization of Membrane Protein Conformational Transitions (2021) DOI
  • An Investigation of the Conformational Dynamics of ABC Exporter PCAT1 using Microsecond-Level MD Simulations (2021) DOI
  • Conformational Transition Pathway of GkPOT (2021) DOI
  • Differential Dynamic Behavior of Prefusion Spike Glycoproteins of Sars Coronaviruses 1 and 2 (2021) DOI

Collaborators

Researchers in the database who share publications

Mahmoud Moradi University of Arkansas at Fayetteville 5 shared publications Vivek Govind Kumar University of Arkansas at Fayetteville 3 shared publications James Losey University of Arkansas at Fayetteville 2 shared publications Ugochi H. Isu University of Arkansas at Fayetteville 2 shared publications Curtis Goolsby University of Arkansas at Fayetteville 1 shared publication Adithya Polasa University of Arkansas at Fayetteville 1 shared publication

Similar Researchers

Based on overlapping research topics

James Losey University of Arkansas at Fayetteville
Protein Structure and Dynamics SARS-CoV-2 and COVID-19 Research Molecular Biology Techniques and Applications
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Shilpi Agrawal University of Arkansas at Little Rock
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Curtis Goolsby University of Arkansas at Fayetteville
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Vivek Govind Kumar University of Arkansas at Fayetteville
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Hope Woods University of Arkansas at Fayetteville
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Sures Thallapuranam University of Arkansas at Fayetteville
Protein Structure and Dynamics SARS-CoV-2 and COVID-19 Research Molecular Biology Techniques and Applications
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